Development of an Algorithm for Identification of N-terminal Acetyltransferases and Verification of Their Functional Activity
https://doi.org/10.33647/2713-0428-19-3E-43-46
Abstract
N-terminal acetyltransferases (NATs) of bacteria acetylate the alpha-amino group in amino acids and proteins, participate in the biosynthesis of lantibiotics, and inactivate a number of antibiotics. NATs are used in biotechnology for targeted acetylation of recombinant proteins and peptides. In this regard, the search for NATs that differ in terms of substrate specificity and are also capable of functioning in the reaction at elevated temperatures, a wide pH range, etc., seems relevant. In this work, we develop specific characteristics and a search algorithm for the identification of N-terminal acetyltransferases using the Thermus thermophilus thermophilic bacterium as an example. Out of 14 Abs annotated in the genome, we selected six «putative» NATs. Some of the genes encoding the selected NATs were successfully cloned, generated, and purified from E. coli cells. The specific enzymatic activity of a number of enzymes was confirmed.
Keywords
About the Authors
T. A. KudryashovRussian Federation
Timofey A. Kudryashov
142290, Moscow Region, Pushchino, Nauki Ave., 3
M. V. Trunilina
Russian Federation
Maria V. Trunilina
142290, Moscow Region, Pushchino, Nauki Ave., 3
V. V. Bykov
Russian Federation
Vyacheslav V. Bykov
142290, Moscow Region, Pushchino, Nauki Ave., 3
I. S. Boldaevsky
Russian Federation
Igor S. Boldaevsky
142290, Moscow Region, Pushchino, Nauki Ave., 3
A. S. Sokolov
Russian Federation
Andrey S. Sokolov - Cand. Sci. (Biol.).
142290, Moscow Region, Pushchino, Nauki Ave., 3
Yu. S. Lapteva
Russian Federation
Yulia S. Lapteva - Cand. Sci. (Biol.).
142290, Moscow Region, Pushchino, Nauki Ave., 3
References
1. Burckhardt R.M., Escalante-Semerena J.C. Small-Molecule Acetylation by GCN5-Related N-Acetyltransferases in Bacteria. Microbiol. Mol. Biol. Rev. 2020;15;84(2):e00090-19. DOI: 10.1128/MMBR.00090-19.
2. Chen J., et al. Production of N(alpha)-acetyl Talpha1HSA through in vitro acetylation by RimJ. Oncotarget. 2017;8(56):95247–95255.
3. Deng S., Marmorstein R. Protein N-Terminal Acetylation: Structural Basis, Mechanism, Versatility, and Regulation. Trends Biochem. Sci. 2021;46(1):15–27.
4. Esipov R.S., et al. Development of the intein-mediated method for production of recombinant thymosin beta4 from the acetylated in vivo fusion protein. J. Biotechnol. 2016;228:73–81.
5. Hentchel K.L., Escalante-Semerena J.C. Acylation of Biomolecules in Prokaryotes: a Widespread Strategy for the Control of Biological Function and Metabolic Stress. Microbiol. Mol. Biol. Rev. 2015;79(3):321–346.
6. Hentchel K.L., Escalante-Semerena J.C. In Salmonella enterica, the Gcn5-related acetyltransferase MddA (formerly YncA) acetylates methionine sulfoximine and methionine sulfone, blocking their toxic effects. J. Bacteriol. 2015;197(2):314–325.
7. Huang E., Yousef A.E. Biosynthesis of paenibacillin, a lantibiotic with N-terminal acetylation, by Paenibacillus polymyxa. Microbiol. Res. 2015;181:15–21.
8. Kazakov T., et al. The RimL transacetylase provides resistance to translation inhibitor microcin C. J. Bacteriology. 2014;196(19):3377–3385.
9. Ren J., et al. Protein Acetylation and Its Role in Bacterial Virulence. Trends Microbiol. 2017;25(9):768–779.
Review
For citations:
Kudryashov T.A., Trunilina M.V., Bykov V.V., Boldaevsky I.S., Sokolov A.S., Lapteva Yu.S. Development of an Algorithm for Identification of N-terminal Acetyltransferases and Verification of Their Functional Activity. Journal Biomed. 2023;19(3E):43-46. (In Russ.) https://doi.org/10.33647/2713-0428-19-3E-43-46