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Cyanobacterial metabolites: computer-aided prediction of biological activity spectra of neosaxitoxin, gonyautoxin II and aeruginoside 126A

Abstract

We identified new and confirmed the previously known types of biological activity for some of the most common cyanobacterial metabolites (microcystins, anabaenopeptinov, saxitoxin) by computer simulation. Within the design based on the target structure (structure-based drug design) was studied docking interaction (3D-QSAR) involving cyano-metabolites molecules. Based on the results of the study the most promising candidates were selected for further study - neosaksitoksin (neosaxitoxin), goniatoksin II (gonyautoxin GTX2) and aeruginozid 126A (aeruginoside 126A), for which the observed properties of the manifestation of cytostatic, anti-tumor antibiotics and anticoagulants.

About the Authors

Ya. V. Russkikh
ФГБУН «Санкт-Петербургский научно-исследовательский центр экологической безопасности РАН», Санкт-Петербург
Russian Federation


E. N. Chernova
ФГБУН «Санкт-Петербургский научно-исследовательский центр экологической безопасности РАН», Санкт-Петербург
Russian Federation


E. I. Afonina
ФГБУН «Санкт-Петербургский научно-исследовательский центр экологической безопасности РАН», Санкт-Петербург
Russian Federation


Z. A. Zhakovskaya
ФГБУН «Санкт-Петербургский научно-исследовательский центр экологической безопасности РАН», Санкт-Петербург
Russian Federation


E. V. Fedorova
ООО «ВВС Лаб», Санкт-Петербург
Russian Federation


V. A. Ostrovskiy
Санкт-Петербургский государственный технологический институт (технический университет), Санкт-Петербург
Russian Federation


References

1. Филимонов Д.А., Лагунин А.А., Глориозова Т.А., Рудик А.В., Дружиловский Д.С., Погодин П.В., Поройков В.В. Предсказание спектров биологической активности органических соединений с помощью веб-ресурса PASS online // Химия гетероциклических соединений. 2014. № 3. С. 483-499.

2. AUTODOCK [Электронный ресурс]. - Режим доступа: http://www.autodock.scripps.edu, свободный. Загл. с экрана. - Язык англ.

3. Dittmann E., Wiegand C. Cyanobacterial toxins - occurrence, biosynthesis and impact on human affairs // Molecular nutrition & Food research. 2006. No. 50. Р. 7-17.

4. Dixit R.B., Suseela M.R. Cyanobacteria: Potential candidates for drug discovery // Antonie van Leeuwenhoek. 2013. No. 103. P. 947-961

5. Filimonov D.A., Poroikov V.V. Probabilistic approaches in activity prediction // Chemoinformatics approaches to virtual screening. Ed. by A. Varnek and A. Tropsha. - Cambridge (UK): RSC Publishing. 2008. P. 182-216.

6. Fleming J.J., Du Bois J. Total Synthesis of (+)- Saxitoxin // J. Am. Chem. Soc. 2006. No.128. Р. 3926-3927.

7. Furey A., Allis O., Ortea P.M., Lehane M., James K.J. Hepatotoxins: context and chemical determination. In: Seafood and freshwater toxins // Pharmacology, physiology and detection. Ed. By Botana L.M. Second Edition. Boca Raton: CRC Press Taylor & Francis Group. 2008. P. 844-886

8. Garrido R., Lagos N., Lattes K., Garcia C., Azolas R., Bocic G., Cuneo A., Chiong H., Jensen C., Henriquez A., Fernandez C. The Gonyautoxin 2/3 epimers reduces anal tone when injected in the anal sphincter of healthy adults // Biological Research. 2004. No.

9. P. 395-403 Halme M., Rapinoja M.L., Karjalainen M., Vanninen P. Verification and quantification of saxitoxin from algal samples using fast and validated hydrophilic interaction liquid chromatography-tandem mass spectrometry method // J. of chromatography b. analytical technologies in the biomedical and life sciences. 2012. Vol. 880. No. 1. Р. 50-57.

10. Jacobi P.A., Martinelli M.J. Polanc S. Total synthesis of (+-)-saxitoxin. // J. Am. chem. soc. 1984. No. 106. Р. 5594-5598.

11. Kurashov E., Fedorova E., Krylova J., Mitrukova G. Assessment of the potential biological activity of low molecular weight metabolites of freshwater macrophytes with QSAR // Scientifica. 2016 (in press).

12. Liu L., Herfindal L., Jokela J., Shishido T.K., Wahlsten M., Døskeland S.O., Sivonen K. Cyanobacteria from terrestrial and marine sources contain apoptogens able to overcome chemoresistance in acute myeloid leukemia cells // Marine drugs. 2014. No. 12. P. 2036-2053.

13. Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. Automated docking using a lamarckian genetic algorithm and an empirical binding free energy function // J. of Computational chemistry. 1998. Vol. 19. No. 14. Р. 1639-1662.

14. Mulcahy J.V., Du Bois J. A stereoselective synthesis of (+)-gonyautoxin 3 // J. Am. chem. soc. 2008. Vol. 130. Р. 12630-12631.

15. REAXYS [Электронный ресурс]. - Режим доступа: http://www.reaxys.com, свободный. - Загл. с экрана. - Язык англ.

16. Randhawa P.S., Farasati N.A., Huang Y., Mapara M.Y., Shapiro R. Viral drug sensitivity testing using quantitative PCR: effect of tyrosine kinase inhibitors on polyomavirus BK replication // Am. J. Clin. pathol. 2010. Vol. 134. No. 6. P. 916-20.

17. Rodriguez-Navarro A.J., Berde Ch.B., Wiedmaier G., Mercado A., Garcia C., Iglesias V., Zurakowski D. Comparison of neosaxitoxin versus bupivacaine via port infiltration for postoperative analgesia following laparoscopic cholecystectomy. A randomized, double-blind trial // Regional anesthesia and pain medicine. 2011. Vol. 36. No. 2. P. 103-109.

18. Tan L.T. Bioactive natural products from marine cyanobacteria for drug discovery // Phytochemistry. 2007. Vol. 68. No. 7. P. 954-979.

19. Trott O., Olson A.J. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading // J. of Computational chemistry. 2010. No. 31. Р. 455-461.

20. Zhong H., Bowen J.Ph. Computer software review // J. Am. Chem. soc. 2007. Vol. 129. No. 17. P. 5780.


Review

For citations:


Russkikh Ya.V., Chernova E.N., Afonina E.I., Zhakovskaya Z.A., Fedorova E.V., Ostrovskiy V.A. Cyanobacterial metabolites: computer-aided prediction of biological activity spectra of neosaxitoxin, gonyautoxin II and aeruginoside 126A. Journal Biomed. 2016;(4):54-64. (In Russ.)

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ISSN 2074-5982 (Print)
ISSN 2713-0428 (Online)